Package: scMetaTraj 0.1.2

scMetaTraj: Metabolic State Space and Trajectory Analysis for Single-Cell Data

Provides a framework for modeling cellular metabolic states and continuous metabolic trajectories from single-cell RNA-seq data using pathway-level scoring. Enables lineage-restricted metabolic analysis, metabolic 'pseudotime' inference, module-level trend analysis, and visualization of metabolic state transitions.

Authors:Jinwei Dai [aut, cre], Zhaoxin Qian [aut], Zhihong Zuo [ctb], Xiaoyang Pang [ctb], Lixin Ke [ctb], Lina Zhang [ctb]

scMetaTraj_0.1.2.tar.gz
scMetaTraj_0.1.2.zip(r-4.7)scMetaTraj_0.1.2.zip(r-4.6)scMetaTraj_0.1.2.zip(r-4.5)
scMetaTraj_0.1.2.tgz(r-4.6-any)scMetaTraj_0.1.2.tgz(r-4.5-any)
scMetaTraj_0.1.2.tar.gz(r-4.7-any)scMetaTraj_0.1.2.tar.gz(r-4.6-any)
scMetaTraj_0.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scMetaTraj/json (API)
NEWS

# Install 'scMetaTraj' in R:
install.packages('scMetaTraj', repos = c('https://dr-xygreg.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dr-xygreg/scmetatraj/issues

On CRAN:

Conda:

5.68 score 32 stars 3 scripts 156 downloads 17 exports 142 dependencies

Last updated from:604357779a. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK208
source / vignettesOK252
linux-release-x86_64OK200
macos-release-arm64OK176
macos-oldrel-arm64OK183
windows-develOK204
windows-releaseOK129
windows-oldrelOK111
wasm-releaseOK163

Exports:scMetaTraj_axis_scorescMetaTraj_clusterscMetaTraj_cluster_profilescMetaTraj_embedscMetaTraj_flowscMetaTraj_inferscMetaTraj_mPT_distributionscMetaTraj_plot_gradientscMetaTraj_plot_module_cardsscMetaTraj_plot_trend_by_clusterscMetaTraj_plot_trend_multiscMetaTraj_scorescMetaTraj_switchpointscMetaTraj_transition_zonescMetaTraj_trendscMetaTraj_trend_by_clusterscMetaTraj_trend_multi

Dependencies:abindaskpassbase64encBHbitopsbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS7sassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo

scMetaTraj workflow

Rendered fromscMetaTraj-workflow.Rmdusingknitr::rmarkdownon May 25 2026.

Last update: 2026-05-24
Started: 2026-01-21